Basic Information
Locus ID:
Seu_jg18166
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 45993921 | 45996008 | - | Seu_jg18166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 78,846.25 Da | 31.65 | 93.84 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 179 | 226 | 3.0E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 383 | 431 | 5.0E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 154 | 177 | 0.65 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 558 | 685 | 1.6E-30 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 76 | 124 | 2.2E-10 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 53 | 73 | 1.9E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 285 | 314 | 0.0096 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 458 | 482 | 0.0079 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 258 | 282 | 0.13 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 358 | 570 | 1.0E-35 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 250 | 342 | 2.0E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 140 | 249 | 2.5E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 3 | 128 | 1.9E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 386 | 419 | 3.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 53 | 79 | 8.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 183 | 216 | 1.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 79 | 114 | 2.0E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | 11.092894 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 180 | 214 | 11.564229 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 283 | 317 | 9.152743 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 46 | 80 | 10.796938 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15130.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021758057.1 | putative pentatricopeptide repeat-containing protein At3g15130 [Chenopodium quinoa] | 0 |
| P0C898 | Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H86 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QZ31 | DYW_deaminase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_131920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17827 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031897 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30324, Sbi_jg43743 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18166 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028084 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71252, Sgl74824 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015971, gene:ENSEOMG00000020746 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001480, CQ.Regalona.r1.2BG0002540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253240 |
| Apiaceae | Apium graveolens | 2 | Ag10G01959, Ag6G02468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022068m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g028090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2134 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2339 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g04800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1361 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.2784, BH09.3020 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298630, gene-QOZ80_4BG0329330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0214790.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064732 |
| Poaceae | Oryza coarctata | 1 | Oco08G019110 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G292000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300539 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G000390, Chr26G018800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G995500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG080060, gene_TRIDC2BG088150 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G577500.1.cds1, TraesCS2B02G609900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb076040_P001 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2552, evm.TU.LG17.1594 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.793 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13690 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11913 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9042 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000004l.52 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18266 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7922 |
| Salicaceae | Populus euphratica | 1 | populus_peu12798 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602789 |
| Solanaceae | Solanum chilense | 1 | SOLCI001403200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024509 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3798 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1671 |
| Zosteraceae | Zostera marina | 1 | Zosma02g01630.v3.1 |