Basic Information
Locus ID:
Seu_jg18003
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 43469238 | 43473016 | - | Seu_jg18003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 49,330.56 Da | 58.02 | 56.92 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 378 | 419 | 3.16035E-16 | - |
| Pfam | PF13639 | Ring finger domain | 378 | 419 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 377 | 421 | 1.17E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 353 | 426 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 378 | 418 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 378 | 419 | 12.946621 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 270 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021746133.1 | probable E3 ubiquitin-protein ligase HIP1 [Chenopodium quinoa] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6VF03 | E3 ubiquitin-protein ligase MBR1-like OS=Gossypium australe OX=47621 GN=EPI10_002692 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19360, Sbi_jg43938 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18002, Seu_jg18003 |