Basic Information
Locus ID:
Seu_jg18002
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 43440115 | 43448620 | - | Seu_jg18002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 51,556.03 Da | 60.87 | 58.84 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 396 | 438 | 1.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 396 | 441 | 1.41E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 372 | 445 | 3.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 397 | 437 | 5.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 397 | 438 | 12.99088 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 137 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031119341.1 | probable E3 ubiquitin-protein ligase ZFP1 isoform X2 [Ipomoea triloba] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7MM20 | RING-type domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_039267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19360, Sbi_jg43938 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18002, Seu_jg18003 |