Basic Information
Locus ID:
Seu_jg17430
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Replication factor A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 26565045 | 26568318 | + | Seu_jg17430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 50,572.21 Da | 35.67 | 88.72 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 266 | 392 | 8.00457E-24 | IPR013955 |
| CDD | cd04481 | RPA1_DBD_B_like | 140 | 240 | 2.3376E-9 | - |
| CDD | cd04480 | RPA1_DBD_A_like | 23 | 105 | 2.20146E-17 | - |
| Pfam | PF08646 | Replication factor-A C terminal domain | 282 | 400 | 3.0E-14 | IPR013955 |
| Pfam | PF16900 | Replication protein A OB domain | 132 | 226 | 2.9E-8 | IPR031657 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 263 | 394 | 1.16E-21 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 120 | 242 | 6.0E-17 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 7 | 109 | 1.76E-10 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 252 | 401 | 2.4E-28 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 5 | 110 | 4.2E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 114 | 245 | 3.2E-25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 447 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_048503654.1 | replication factor A protein 1-like isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q10Q08 | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0URY7 | Replication protein A subunit OS=Panicum virgatum OX=38727 GN=PVAP13_3KG088000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology