Basic Information
Locus ID:
Seu_jg17278
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 23019590 | 23025633 | - | Seu_jg17278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 51,234.31 Da | 34.25 | 93.36 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 85 | 282 | 2.78764E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 293 | 423 | 8.15217E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 306 | 414 | 1.4E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 105 | 266 | 6.5E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 149 | 434 | 3.68E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 70 | 288 | 1.3E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 289 | 453 | 2.4E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 333 | 414 | 3.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 99 | 296 | 1.2E-57 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 292 | 453 | 25.198158 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 80 | 108 | 10.656934 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 111 | 281 | 29.484457 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 227 | 235 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_021763732.1 | eukaryotic initiation factor 4A-9 [Chenopodium quinoa] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A249Y6Z7 | Eukaryotic initiation factor 4A OS=Hylocereus polyrhizus OX=1195597 GN=IF4A1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology