halophFGD

Basic Information

Locus ID: Seu_jg1716

Species & Taxonomic ID: Salicornia europaea & 206448

Genome Assembly:

Description: FBD-associated F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000012l	8333653	8352074	-	Seu_jg1716

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.73	60,430.79 Da	58.97	101.40	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08387	FBD	444	488	1.5E-7	IPR006566
Pfam	PF00646	F-box domain	195	233	1.4E-4	IPR001810
SUPERFAMILY	SSF52047	RNI-like	155	433	2.16E-5	-
SUPERFAMILY	SSF81383	F-box domain	193	244	3.27E-8	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	224	527	1.6E-6	IPR032675
SMART	SM00579	9598neu4hmm	448	517	6.1E-4	IPR006566

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021844104.1	F-box/FBD/LRR-repeat protein At5g22660-like [Spinacia oleracea]	0
TrEMBL	A0A0K9R1R6	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_116710 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg3430
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14946, gene_2052, gene_21862, gene_26502
Amaranthaceae	Atriplex hortensis	48	Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... Ah004143, Ah004144, Ah010182, Ah010183, Ah010184, Ah010185, Ah010189, Ah010190, Ah010191, Ah011613, Ah011617, Ah021837, Ah032644, Ah034167, Ah034178, Ah034223, Ah034224, Ah034225, Ah034226, Ah034227, Ah034228, Ah034229, Ah034230, Ah034231, Ah034232, Ah034236, Ah034237, Ah034238, Ah034239, Ah034241, Ah034248, Ah034250, Ah034251, Ah034252, Ah034253, Ah034254, Ah034255, Ah034410, Ah034415, Ah034837, Ah034839, Ah034896
Amaranthaceae	Beta vulgaris	4	BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590
Amaranthaceae	Salicornia bigelovii	21	Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... Sbi_jg19534, Sbi_jg19535, Sbi_jg19536, Sbi_jg20316, Sbi_jg20627, Sbi_jg20631, Sbi_jg21721, Sbi_jg29867, Sbi_jg29869, Sbi_jg38800, Sbi_jg40147, Sbi_jg50068, Sbi_jg50070, Sbi_jg54075, Sbi_jg62024, Sbi_jg62603, Sbi_jg9514
Amaranthaceae	Salicornia europaea	14	Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... Seu_jg16022, Seu_jg16987, Seu_jg1716, Seu_jg1717, Seu_jg17204, Seu_jg17879, Seu_jg17880, Seu_jg17881, Seu_jg19118, Seu_jg28729
Amaranthaceae	Suaeda aralocaspica	15	GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... GOSA_00009192, GOSA_00009193, GOSA_00009194, GOSA_00009195, GOSA_00014547, GOSA_00016944, GOSA_00022487, GOSA_00022724, GOSA_00022726, GOSA_00022727, GOSA_00027758
Amaranthaceae	Suaeda glauca	41	Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... Sgl27396, Sgl33675, Sgl35894, Sgl35909, Sgl35977, Sgl35984, Sgl38986, Sgl41276, Sgl41282, Sgl41299, Sgl56156, Sgl61596, Sgl61597, Sgl63414, Sgl63415, Sgl63419, Sgl63420, Sgl63442, Sgl63443, Sgl63444, Sgl63445, Sgl63813, Sgl65682, Sgl65683, Sgl67894, Sgl67895, Sgl67899, Sgl67900, Sgl67921, Sgl67922, Sgl67923, Sgl67924, Sgl68298, Sgl69997, Sgl69998
Amaranthaceae	Chenopodium album	51	gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... gene:ENSEOMG00000007373, gene:ENSEOMG00000007602, gene:ENSEOMG00000016056, gene:ENSEOMG00000016396, gene:ENSEOMG00000017106, gene:ENSEOMG00000017456, gene:ENSEOMG00000017749, gene:ENSEOMG00000017965, gene:ENSEOMG00000018174, gene:ENSEOMG00000018215, gene:ENSEOMG00000018243, gene:ENSEOMG00000018263, gene:ENSEOMG00000018417, gene:ENSEOMG00000018597, gene:ENSEOMG00000018704, gene:ENSEOMG00000018989, gene:ENSEOMG00000019082, gene:ENSEOMG00000019375, gene:ENSEOMG00000019429, gene:ENSEOMG00000019801, gene:ENSEOMG00000019936, gene:ENSEOMG00000020328, gene:ENSEOMG00000020437, gene:ENSEOMG00000020456, gene:ENSEOMG00000020470, gene:ENSEOMG00000021807, gene:ENSEOMG00000022387, gene:ENSEOMG00000022409, gene:ENSEOMG00000022826, gene:ENSEOMG00000022893, gene:ENSEOMG00000023269, gene:ENSEOMG00000024591, gene:ENSEOMG00000024656, gene:ENSEOMG00000025138, gene:ENSEOMG00000027230, gene:ENSEOMG00000048632, gene:ENSEOMG00000048956, gene:ENSEOMG00000049212, gene:ENSEOMG00000049388, gene:ENSEOMG00000049477, gene:ENSEOMG00000049618, gene:ENSEOMG00000050075, gene:ENSEOMG00000050076, gene:ENSEOMG00000050099, gene:ENSEOMG00000050608, gene:ENSEOMG00000051001, gene:ENSEOMG00000051158, gene:ENSEOMG00000051276, gene:ENSEOMG00000051858
Amaranthaceae	Chenopodium quinoa	42	CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... CQ.Regalona.r1.2AG0012810, CQ.Regalona.r1.2AG0012820, CQ.Regalona.r1.2AG0012830, CQ.Regalona.r1.2AG0012840, CQ.Regalona.r1.2AG0012850, CQ.Regalona.r1.2AG0012860, CQ.Regalona.r1.2AG0013410, CQ.Regalona.r1.2BG0011650, CQ.Regalona.r1.2BG0014480, CQ.Regalona.r1.2BG0014490, CQ.Regalona.r1.2BG0014510, CQ.Regalona.r1.2BG0014530, CQ.Regalona.r1.2BG0014540, CQ.Regalona.r1.2BG0014570, CQ.Regalona.r1.2BG0014580, CQ.Regalona.r1.2BG0014590, CQ.Regalona.r1.2BG0014630, CQ.Regalona.r1.2BG0014640, CQ.Regalona.r1.2BG0014650, CQ.Regalona.r1.2BG0014660, CQ.Regalona.r1.2BG0014700, CQ.Regalona.r1.2BG0014710, CQ.Regalona.r1.2BG0014730, CQ.Regalona.r1.2BG0015420, CQ.Regalona.r1.2BG0015430, CQ.Regalona.r1.2BG0018270, CQ.Regalona.r1.4AG0014490, CQ.Regalona.r1.5AG0011260, CQ.Regalona.r1.5AG0011270, CQ.Regalona.r1.5AG0011980, CQ.Regalona.r1.5BG0003820, CQ.Regalona.r1.5BG0003830, CQ.Regalona.r1.5BG0012080, CQ.Regalona.r1.5BG0012180, CQ.Regalona.r1.5BG0012740, CQ.Regalona.r1.8BG0016730, CQ.Regalona.r1.9AG0017330, CQ.Regalona.r1.9AG0017340, CQ.Regalona.r1.9AG0017350, CQ.Regalona.r1.9AG0017360
Anacardiaceae	Pistacia vera	1	pistato.v30150730
Brassicaceae	Brassica nigra	1	BniB01g014240.2N
Plantaginaceae	Plantago ovata	3	Pov_00039776, Pov_00040470, Pov_00040689
Poaceae	Lolium multiflorum	1	gene-QYE76_061951
Poaceae	Zoysia japonica	2	nbis-gene-29604, nbis-gene-29605
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... evm.TU.LG16.533, evm.TU.LG16.534, evm.TU.LG19.449
Solanaceae	Lycium barbarum	1	gene-LOC132627161
Solanaceae	Solanum chilense	1	SOLCI004431500
Tamaricaceae	Reaumuria soongarica	1	STRG.31115_chr11_+
Tamaricaceae	Tamarix chinensis	1	TC07G0268