Basic Information
Locus ID:
Seu_jg16835
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 14338255 | 14344912 | + | Seu_jg16835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 76,989.56 Da | 44.53 | 82.63 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16953 | Protein-only RNase P | 442 | 668 | 2.2E-70 | IPR031595 |
| Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 31 | 78 | 2.0E-6 | IPR004045 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 189 | 400 | 1.9E-72 | IPR033443 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 22 | 73 | 5.36E-6 | IPR036249 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 196 | 671 | 3.9E-229 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 460 | 634 | 3.9E-229 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 2 | 90 | 1.0E-29 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | 9.20755 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_010669732.2 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8FP36 | ribonuclease P OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_2g036660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology