Basic Information
Locus ID:
Seu_jg1675
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 7629248 | 7638208 | - | Seu_jg1675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 157,285.11 Da | 39.83 | 104.77 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1172 | 1392 | 2.91691E-117 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 856 | 1149 | 2.51532E-85 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 234 | 529 | 5.12215E-75 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 555 | 757 | 3.09846E-111 | - |
| Pfam | PF00005 | ABC transporter | 1191 | 1339 | 1.3E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 236 | 508 | 3.2E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 856 | 1105 | 1.6E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 575 | 709 | 5.9E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 226 | 536 | 5.1E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 566 | 782 | 7.17E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 853 | 1156 | 2.09E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1166 | 1400 | 8.64E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 223 | 533 | 1.4E-39 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1157 | 1410 | 5.8E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 534 | 804 | 7.7E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 820 | 1155 | 2.1E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1200 | 1392 | 1.3E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 584 | 757 | 1.1E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 233 | 521 | 26.167068 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 857 | 1137 | 32.365631 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 555 | 780 | 21.615425 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1176 | 1408 | 17.106977 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 682 | 696 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021752684.1 | ABC transporter C family member 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology