Basic Information
Locus ID:
Seu_jg16605
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 11000999 | 11001820 | - | Seu_jg16605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 31,186.12 Da | 38.11 | 90.99 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 162 | 246 | 1.2E-5 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 18 | 139 | 1.0E-11 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 15 | 268 | 7.51E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 271 | 2.1E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_010665982.1 | probable CCR4-associated factor 1 homolog 7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9DAD4 | poly(A)-specific ribonuclease OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology