Basic Information
Locus ID:
Seu_jg16603
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
CHD3-type chromatin-remodeling factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 10947065 | 10984952 | - | Seu_jg16603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 162,445.02 Da | 46.20 | 81.41 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18659 | CD2_tandem | 208 | 258 | 2.03958E-20 | - |
| CDD | cd18660 | CD1_tandem | 116 | 190 | 6.27499E-20 | - |
| CDD | cd18793 | SF2_C_SNF | 626 | 752 | 2.3841E-58 | - |
| Pfam | PF06461 | Domain of Unknown Function (DUF1086) | 956 | 1087 | 3.4E-53 | IPR009462 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 324 | 604 | 7.6E-64 | IPR000330 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 119 | 171 | 2.2E-9 | IPR023780 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 629 | 741 | 6.1E-18 | IPR001650 |
| Pfam | PF08074 | CHDCT2 (NUC038) domain | 1101 | 1133 | 8.7E-7 | IPR012957 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 211 | 259 | 1.1E-15 | IPR023780 |
| Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 863 | 924 | 3.2E-23 | IPR009463 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 291 | 538 | 1.01E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 540 | 797 | 3.6E-67 | IPR027417 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 201 | 266 | 6.05E-16 | IPR016197 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 84 | 194 | 7.55E-18 | IPR016197 |
| Gene3D | G3DSA:2.40.50.40 | - | 118 | 193 | 2.0E-13 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 1057 | 1231 | 3.7E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 117 | 6.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 295 | 547 | 1.0E-194 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 548 | 772 | 1.0E-194 | IPR027417 |
| Gene3D | G3DSA:2.40.50.40 | - | 196 | 259 | 1.2E-16 | - |
| SMART | SM00490 | helicmild6 | 657 | 741 | 3.0E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 299 | 514 | 1.0E-32 | IPR014001 |
| SMART | SM00298 | chromo_7 | 208 | 262 | 6.2E-14 | IPR000953 |
| SMART | SM01146 | DUF1086_2 | 932 | 1090 | 4.1E-75 | IPR009462 |
| SMART | SM00298 | chromo_7 | 117 | 186 | 2.1E-9 | IPR000953 |
| SMART | SM00249 | PHD_3 | 71 | 114 | 3.5E-10 | IPR001965 |
| SMART | SM01147 | DUF1087_2 | 861 | 927 | 1.1E-26 | IPR009463 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 118 | 200 | 11.5439 | IPR000953 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 315 | 503 | 23.869808 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 631 | 792 | 19.661068 | IPR001650 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 69 | 116 | 9.454399 | IPR019787 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 210 | 269 | 12.810901 | IPR000953 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 72 | 113 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1365 | 1401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1356 | 1422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 290 | - | - |
| Coils | Coil | Coil | 856 | 876 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25170.2 | - | 0 |
| RefSeq | XP_010665940.1 | CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S775 | CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=PKL PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ59 | CHD3-type chromatin-remodeling factor PICKLE OS=Spinacia oleracea OX=3562 GN=SOVF_160790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24036, jg36561 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13270 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21073, Sbi_jg22724 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16603 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018284 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62396, Sgl66943, Sgl66945 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000016795, gene:ENSEOMG00000018331 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021900, CQ.Regalona.r1.2AG0023680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250780 |
| Apiaceae | Apium graveolens | 2 | Ag6G01340, Ag7G01355 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714226 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1846.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G19512, Ftri12G11603 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G25170.1, AT4G31900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000014m.g.v1.0, Thhalv10027006m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g04150.v2.2, Sp7g29720.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g023330.2N, BniB02g085630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2427 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2631, Cgl04G2660 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06310 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0001s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1510 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006955, Pov_00013937 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17059 |
| Poaceae | Echinochloa crus-galli | 2 | BH06.610, CH06.624 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511350, gene-QOZ80_6BG0463330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0658830.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028191, gene-QYE76_028236 |
| Poaceae | Oryza coarctata | 2 | Oco11G003860, Oco12G003850 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G065800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0405231, Pt_Chr0405252, Pt_Chr0405255 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021470, Chr14G002860, Chr21G002040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G299600 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G147100.2, TraesCS7B02G050100.3 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34880, nbis-gene-4997 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29235, Zma_g31473 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.1548, evm.TU.LG07.1217, evm.TU.LG07.596 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.892 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13581 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20561, nbisL1-mrna-838 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9145 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.200 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003979 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3742 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7816 |
| Salicaceae | Populus euphratica | 2 | populus_peu04702, populus_peu12984 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132636060, gene-LOC132643757 |
| Solanaceae | Solanum chilense | 2 | SOLCI006571200, SOLCI006784900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023146, gene-LOC107028501 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17290, gene_6399 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0997, TC06G0063 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06310.v3.1 |