Basic Information
Locus ID:
Seu_jg16550
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 10160020 | 10167252 | + | Seu_jg16550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 64,176.73 Da | 33.87 | 104.76 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 1.62337E-23 | - |
| CDD | cd00030 | C2 | 442 | 538 | 3.02554E-27 | - |
| Pfam | PF00168 | C2 domain | 440 | 534 | 5.1E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 2.3E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 248 | 6.5E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 439 | 556 | 2.99E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.71E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 402 | 2.8E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 421 | 558 | 2.3E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 4.6E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 1.2E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.207836 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.224909 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 421 | 540 | 21.571363 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 1.4E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 1.4E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 1.4E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RI35 | Synaptotagmin-5 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_064340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology