Basic Information
Locus ID:
Seu_jg16477
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 9176004 | 9179753 | + | Seu_jg16477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 52,509.29 Da | 43.98 | 72.36 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 177 | 453 | 2.48266E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 240 | 0.22 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 2.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 368 | 3.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 418 | 453 | 8.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 153 | 454 | 7.33E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 455 | 2.1E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 371 | 411 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 368 | 8.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 197 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 240 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 280 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 1.1E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 323 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 249 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 377 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 454 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 454 | 14.184453 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 440 | 454 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 355 | 369 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 146 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology