Basic Information
Locus ID:
Seu_jg15850
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 1291867 | 1293618 | + | Seu_jg15850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 66,262.23 Da | 41.92 | 70.88 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 366 | 390 | 0.25 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 294 | 322 | 0.0043 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 229 | 252 | 0.65 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 265 | 291 | 0.054 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 460 | 573 | 2.0E-35 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 195 | 355 | 6.1E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 294 | 326 | 4.6E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | 10.073492 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_010692972.2 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M4E5 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology