Basic Information
Locus ID:
Seu_jg15710
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 7128163 | 7139107 | + | Seu_jg15710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 56,930.63 Da | 53.41 | 79.18 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 324 | 501 | 8.57677E-115 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 323 | 430 | 7.9E-19 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 104 | 7.9E-12 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 326 | 457 | 4.05E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 135 | 4.4E-32 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 310 | 501 | 1.1E-73 | - |
| SMART | SM00232 | pad1_6 | 326 | 454 | 4.5E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 327 | 457 | 30.267721 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 321 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010670900.1 | AMSH-like ubiquitin thioesterase 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RGC4 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_069510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology