Basic Information
Locus ID:
Seu_jg15599
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 5444107 | 5453943 | + | Seu_jg15599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 40,150.54 Da | 61.89 | 66.33 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 301 | 341 | 1.86126E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 300 | 346 | 3.4E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 348 | 4.04E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 351 | 3.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 340 | 0.0013 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 20 | 142 | 620.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 282 | 353 | 2.1E-8 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 302 | 341 | 11.338544 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021757089.1 | probable E3 ubiquitin-protein ligase LUL3 [Chenopodium quinoa] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1VUB6 | RING-type E3 ubiquitin transferase OS=Morella rubra OX=262757 GN=CJ030_MR5G023163 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology