Basic Information
Locus ID:
Seu_jg15568
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 4895875 | 4907535 | + | Seu_jg15568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 42,144.05 Da | 53.58 | 74.66 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.54579E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 270 | 325 | 5.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 350 | 386 | 9.8E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.3E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 170 | 207 | 4.2E-12 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 266 | 333 | 2.62E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 78 | 1.17E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 330 | 393 | 8.82E-16 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 166 | 216 | 5.11E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 342 | 391 | 1.1E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 260 | 325 | 4.6E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 162 | 212 | 3.8E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.8E-25 | - |
| SMART | SM00727 | CBM | 268 | 311 | 2.2E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 169 | 209 | 0.0024 | IPR015940 |
| SMART | SM00165 | uba_6 | 351 | 388 | 7.9E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.0E-21 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 394 | 1.7E-131 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 349 | 389 | 15.366255 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 167 | 210 | 12.113146 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.477304 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 296 | 318 | 1.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 376 | 1.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 392 | 1.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 361 | 1.8E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 155 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8BCQ7 | Ubiquitin receptor RAD23 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology