Basic Information
Locus ID:
Seu_jg15538
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 4279178 | 4317886 | + | Seu_jg15538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 90,837.64 Da | 34.79 | 85.34 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 474 | 788 | 1.9E-82 | IPR000743 |
| Pfam | PF00153 | Mitochondrial carrier protein | 37 | 118 | 7.8E-11 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 209 | 292 | 6.9E-15 | IPR018108 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 30 | 286 | 2.88E-43 | IPR023395 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 434 | 820 | 7.33E-121 | IPR011050 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 25 | 167 | 1.2E-21 | IPR023395 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 168 | 293 | 3.9E-21 | IPR023395 |
| Gene3D | G3DSA:2.160.20.10 | - | 429 | 818 | 1.4E-115 | IPR012334 |
| SMART | SM00710 | pbh1 | 651 | 671 | 7300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 628 | 649 | 3600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 681 | 702 | 10.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 601 | 627 | 140.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 710 | 731 | 2500.0 | IPR006626 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 30 | 115 | 13.609974 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 204 | 291 | 18.651453 | IPR018108 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 658 | 671 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010672584.1 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology