HalophFGD

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Basic Information
Locus ID: Seu_jg15369
Species & Taxonomic ID: Salicornia europaea & 206448
Genome Assembly:
Description: U-box domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
ptg000017l 2034632 2051247 + Seu_jg15369
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.60 187,795.53 Da 42.30 84.09 -0.41
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd01989 STK_N 839 1002 5.87354E-30 -
CDD cd16655 RING-Ubox_WDSUB1_like 760 800 2.6657E-22 -
CDD cd01989 STK_N 14 169 2.69891E-31 -
CDD cd16655 RING-Ubox_WDSUB1_like 1633 1673 1.67897E-21 -
Pfam PF00069 Protein kinase domain 480 718 2.9E-39 IPR000719
Pfam PF00069 Protein kinase domain 1346 1623 4.9E-39 IPR000719
Pfam PF04564 U-box domain 1630 1698 6.7E-16 IPR003613
Pfam PF04564 U-box domain 756 825 2.7E-17 IPR003613
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 452 733 4.32E-63 IPR011009
SUPERFAMILY SSF57850 RING/U-box 1618 1697 2.47E-22 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1325 1602 2.83E-63 IPR011009
SUPERFAMILY SSF57850 RING/U-box 750 823 1.32E-23 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 548 754 9.1E-45 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1416 1629 1.1E-46 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1312 1415 6.1E-21 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 1630 1698 2.6E-24 IPR013083
Gene3D G3DSA:3.40.50.620 HUPs 14 169 2.9E-5 IPR014729
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 455 547 1.4E-20 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 755 830 1.9E-27 IPR013083
Gene3D G3DSA:3.40.50.620 HUPs 839 975 3.8E-5 IPR014729
SMART SM00220 serkin_6 1343 1608 2.5E-26 IPR000719
SMART SM00504 Ubox_2 759 821 6.3E-25 IPR003613
SMART SM00504 Ubox_2 1632 1694 5.9E-22 IPR003613
SMART SM00220 serkin_6 475 740 7.7E-25 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 1343 1635 35.113815 IPR000719
ProSiteProfiles PS51698 U-box domain profile. 755 828 34.305389 IPR003613
ProSiteProfiles PS50011 Protein kinase domain profile. 475 762 32.753437 IPR000719
ProSiteProfiles PS51698 U-box domain profile. 1628 1698 27.246523 IPR003613
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 593 605 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1349 1370 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1461 1473 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 481 502 - IPR017441
MobiDBLite mobidb-lite consensus disorder prediction 1099 1123 - -
MobiDBLite mobidb-lite consensus disorder prediction 1020 1123 - -
MobiDBLite mobidb-lite consensus disorder prediction 1074 1098 - -
MobiDBLite mobidb-lite consensus disorder prediction 1020 1073 - -
MobiDBLite mobidb-lite consensus disorder prediction 1262 1310 - -
Coils Coil Coil 1250 1284 - -
Coils Coil Coil 350 377 - -
Coils Coil Coil 387 425 - -
Coils Coil Coil 1608 1628 - -
Coils Coil Coil 1227 1247 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G25160.1 U-box domain-containing protein kinase family protein. 0
RefSeq XP_019103851.2 U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q9SW11 U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 0
TrEMBL A0A803M074 RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 1 Ah018816
Amaranthaceae Salicornia europaea 1 Seu_jg15369
Amaranthaceae Suaeda glauca 3 Sgl01894, Sgl01917, Sgl07075
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.