Basic Information
Locus ID:
Seu_jg15369
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 2034632 | 2051247 | + | Seu_jg15369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 187,795.53 Da | 42.30 | 84.09 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 839 | 1002 | 5.87354E-30 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 760 | 800 | 2.6657E-22 | - |
| CDD | cd01989 | STK_N | 14 | 169 | 2.69891E-31 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1633 | 1673 | 1.67897E-21 | - |
| Pfam | PF00069 | Protein kinase domain | 480 | 718 | 2.9E-39 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1346 | 1623 | 4.9E-39 | IPR000719 |
| Pfam | PF04564 | U-box domain | 1630 | 1698 | 6.7E-16 | IPR003613 |
| Pfam | PF04564 | U-box domain | 756 | 825 | 2.7E-17 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 452 | 733 | 4.32E-63 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1618 | 1697 | 2.47E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1325 | 1602 | 2.83E-63 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 750 | 823 | 1.32E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 548 | 754 | 9.1E-45 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1416 | 1629 | 1.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1312 | 1415 | 6.1E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1630 | 1698 | 2.6E-24 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 14 | 169 | 2.9E-5 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 455 | 547 | 1.4E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 755 | 830 | 1.9E-27 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 839 | 975 | 3.8E-5 | IPR014729 |
| SMART | SM00220 | serkin_6 | 1343 | 1608 | 2.5E-26 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 759 | 821 | 6.3E-25 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1632 | 1694 | 5.9E-22 | IPR003613 |
| SMART | SM00220 | serkin_6 | 475 | 740 | 7.7E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1343 | 1635 | 35.113815 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 755 | 828 | 34.305389 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 475 | 762 | 32.753437 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1628 | 1698 | 27.246523 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 593 | 605 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1349 | 1370 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1461 | 1473 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 481 | 502 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1074 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1262 | 1310 | - | - |
| Coils | Coil | Coil | 1250 | 1284 | - | - |
| Coils | Coil | Coil | 350 | 377 | - | - |
| Coils | Coil | Coil | 387 | 425 | - | - |
| Coils | Coil | Coil | 1608 | 1628 | - | - |
| Coils | Coil | Coil | 1227 | 1247 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25160.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_019103851.2 | U-box domain-containing protein 35 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M074 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018816 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15369 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01894, Sgl01917, Sgl07075 |