Basic Information
Locus ID:
Seu_jg15342
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 1678774 | 1685946 | + | Seu_jg15342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 32,407.25 Da | 46.61 | 76.50 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 38 | 121 | 2.0E-13 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 34 | 125 | 1.06E-23 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 141 | 1.2E-20 | IPR036431 |
| SMART | SM00501 | bright_3 | 35 | 126 | 1.1E-21 | IPR001606 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 1.2E-17 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 20.45595 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 289 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021849271.1 | high mobility group B protein 10-like [Spinacia oleracea] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q7P0 | ARID domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_211070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology