Basic Information
Locus ID:
Seu_jg1534
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 4471360 | 4488463 | - | Seu_jg1534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 76,141.85 Da | 48.59 | 84.26 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 366 | 635 | 4.70015E-90 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 33 | 127 | 9.6E-21 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 361 | 629 | 7.9E-51 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 152 | 241 | 5.3E-10 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 341 | 633 | 1.19E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 437 | 641 | 8.7E-56 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 140 | 243 | 2.7E-17 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 27 | 129 | 1.4E-24 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 338 | 436 | 2.8E-30 | - |
| SMART | SM00220 | serkin_6 | 360 | 633 | 7.2E-42 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 136 | 244 | 14.89568 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 360 | 637 | 41.050095 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 28 | 130 | 19.132065 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 366 | 389 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 482 | 494 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 277 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05200.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 25. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_021766958.1 | cysteine-rich receptor-like protein kinase 10 isoform X1 [Chenopodium quinoa] | 0 |
| Q9M0X5 | Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CRK25 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803NDA4 | Cysteine-rich receptor-like protein kinase 25 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40995, Sbi_jg40999 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1534 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl46124, Sgl50824 |