Basic Information
Locus ID:
Seu_jg15141
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000019l | 1848400 | 1852235 | - | Seu_jg15141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 81,142.96 Da | 41.06 | 86.36 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 197 | 217 | 1.3 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 41 | 73 | 4.7E-5 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 556 | 664 | 3.0E-8 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 333 | 371 | 9.9E-5 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 550 | 680 | 4.45E-17 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 441 | 1.09E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 334 | 459 | 2.7E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 330 | 4.6E-72 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 519 | 687 | 6.7E-26 | - |
| SMART | SM00369 | LRR_typ_2 | 99 | 121 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 397 | 421 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 218 | 0.072 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 146 | 171 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 122 | 145 | 92.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 337 | 675 | 9.305132 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 101 | 123 | 7.711955 | IPR001611 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 747 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010685103.2 | receptor-like kinase TMK4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8C077 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_7g168170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology