Basic Information
Locus ID:
Seu_jg1509
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
strictosidine synthase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 4147860 | 4157963 | - | Seu_jg1509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 62,310.53 Da | 33.83 | 66.24 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 78 | 172 | 5.7E-13 | IPR005162 |
| Pfam | PF00069 | Protein kinase domain | 343 | 504 | 1.8E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 343 | 513 | 1.06E-39 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 337 | 516 | 8.0E-44 | - |
| SMART | SM00220 | serkin_6 | 263 | 518 | 3.0E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 216 | 518 | 18.718376 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 374 | 386 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 324 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23190.3 | - | 0 |
| RefSeq | XP_021744678.1 | uncharacterized protein LOC110710656 [Chenopodium quinoa] | 0 |
| Q9ZP16 | Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana OX=3702 GN=CRK11 PE=2 SV=2 | 0 | |
| TrEMBL | A2I5E5 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g086710, BVRB_8g189320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25647, Sbi_jg35810 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1509, Seu_jg7247 |
| Amaranthaceae | Suaeda glauca | 30 | Sgl05059, Sgl08276, Sgl09509, Sgl10099, Sgl13129, Sgl14136 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0010420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26473, Lb8G36574 |