Basic Information
Locus ID:
Seu_jg15064
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000019l | 1141010 | 1162842 | + | Seu_jg15064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 81,261.84 Da | 46.60 | 62.92 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 467 | 743 | 4.70029E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 468 | 495 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 626 | 661 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 537 | 3.0E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.1E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 468 | 743 | 3.89E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 598 | 743 | 2.9E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 460 | 597 | 3.6E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 457 | 495 | 8.2E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 541 | 581 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 664 | 703 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 661 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 705 | 743 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 2.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 620 | 2.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 630 | 670 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 504 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 712 | 743 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 505 | 540 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 712 | 743 | 9.836508 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.40982 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 546 | 13.649761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 482 | 496 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 524 | 538 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 374 | - | - |
| Coils | Coil | Coil | 87 | 107 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology