halophFGD

Basic Information

Locus ID: Seu_jg14697

Species & Taxonomic ID: Salicornia europaea & 206448

Genome Assembly:

Short Name: TRIP-1

Description: component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000003l	7153011	7157974	-	Seu_jg14697

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.31	14,252.04 Da	46.34	71.23	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	92	124	2.09E-5	IPR036322
MobiDBLite	mobidb-lite	consensus disorder prediction	49	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	23	64	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03246 (translation initiation factor 3 subunit I)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048493400.1	eukaryotic translation initiation factor 3 subunit I isoform X2 [Beta vulgaris subsp. vulgaris]	0
TrEMBL	A0A803KTV0	Eukaryotic translation initiation factor 3 subunit I OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg36150, Sbi_jg854
Amaranthaceae	Salicornia europaea	3	Seu_jg14697, Seu_jg22036, Seu_jg3800
Amaranthaceae	Suaeda glauca	2	Sgl74566, Sgl83234