Basic Information
Locus ID:
Seu_jg14558
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
psbP domain-containing protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 5199357 | 5202128 | + | Seu_jg14558 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 28,890.01 Da | 40.40 | 75.96 | -0.19 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76450.1 | Photosystem II reaction center PsbP family protein. | 0 |
| RefSeq | XP_021717780.1 | psbP domain-containing protein 3, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q9S720 | PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RAY3 | PsbP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_091580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10900 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8321 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035787 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g013940 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39786, Sbi_jg55131 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14558 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013083 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12401, Sgl17713 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019068, gene:ENSEOMG00000033719 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023620, CQ.Regalona.r1.1BG0000600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30047970 |
| Apiaceae | Apium graveolens | 1 | Ag3G02586 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G004790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705217 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1472.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G18079 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G76450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019042m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g31620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g055490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1412 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1542 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0117s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06640 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.31 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037478 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37713 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2046, BH08.2155, CH08.2326 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0636970, gene-QOZ80_8BG0665520 |
| Poaceae | Oryza coarctata | 2 | Oco15G011050, Oco16G011500 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g40160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G187400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403773, Pt_Chr0403800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002000, Chr29G002360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G437800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG031940, gene_TRIDC7BG022550 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G248600.1, TraesCS7B02G142700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb035340_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17422 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.289, evm.TU.LG04.464 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23620 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30034 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16349 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.589 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20808 |
| Salicaceae | Populus euphratica | 1 | populus_peu38454 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604201 |
| Solanaceae | Solanum chilense | 1 | SOLCI007107200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005168 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1182 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2388 |