Basic Information
Locus ID:
Seu_jg14445
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 3738307 | 3740302 | - | Seu_jg14445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 54,039.96 Da | 42.91 | 85.75 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 47 | 1.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 55 | 1.57E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 48 | 1.4E-9 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 1.1E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 200 | 373 | 8.9E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 50 | 11.034144 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048501650.1 | uncharacterized protein LOC104884905 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B1Y0 | FBA_1 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_013040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25372 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001202, Ah001206, Ah022052 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg29762, Sbi_jg29763, Sbi_jg29764, Sbi_jg30203 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg14445, Seu_jg14446, Seu_jg14451, Seu_jg18609 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014214 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13216, Sgl18431 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052662 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0016190, CQ.Regalona.r1.6BG0017350 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.203 |