Basic Information
Locus ID:
Seu_jg14381
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 2886491 | 2887343 | - | Seu_jg14381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 9,982.56 Da | 46.20 | 97.33 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 28 | 85 | 4.8E-14 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 18 | 84 | 6.28E-20 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 16 | 86 | 2.9E-17 | IPR036431 |
| SMART | SM01014 | ARID_2 | 20 | 86 | 3.0E-9 | - |
| SMART | SM00501 | bright_3 | 24 | 86 | 8.0E-5 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 86 | 20.271339 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021840990.1 | high mobility group B protein 9-like, partial [Spinacia oleracea] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LIQ6 | High mobility group B protein 9 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology