Basic Information
Locus ID:
Seu_jg13841
Species & Taxonomic ID:
Salicornia europaea & 206448
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 3526798 | 3562910 | - | Seu_jg13841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 131,198.36 Da | 42.08 | 77.61 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 55 | 178 | 4.21139E-36 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 196 | 524 | 4.69971E-167 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1096 | 1.2E-54 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 623 | 875 | 3.2E-74 | IPR024729 |
| Pfam | PF00917 | MATH domain | 62 | 180 | 1.9E-17 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 519 | 1.5E-45 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 186 | 1.1E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 550 | 3.14E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 800 | 4.4E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 3.0E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 194 | 6.1E-49 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 523 | 3.2E-88 | - |
| SMART | SM00061 | math_3 | 55 | 159 | 5.6E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 522 | 39.330776 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 37.138962 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 438 | 455 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1121 | - | - |
| Coils | Coil | Coil | 538 | 558 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010677617.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RIK2 | ubiquitinyl hydrolase 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology