Basic Information
Locus ID:
Seu_jg12841
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 24564690 | 24570890 | - | Seu_jg12841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.15 | 30,892.71 Da | 52.86 | 74.95 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 269 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021855957.1 | uncharacterized protein LOC110795258 isoform X1 [Spinacia oleracea] | 0 |
| TrEMBL | A0A803N3N5 | AAI domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14841, gene_14846, gene_1931 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah004731, Ah004732, Ah004733, Ah004734, Ah004735 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g098120, BVRB_5g098130, BVRB_5g098140 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg12924, Sbi_jg12925, Sbi_jg4916, Sbi_jg4919, Sbi_jg7185 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg12841, Seu_jg12848, Seu_jg8918, Seu_jg8919 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001500 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5BG0000650, CQ.Regalona.r1.5BG0000700 ... |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG10.190, evm.TU.LG10.205, evm.TU.LG10.207 ... |