Basic Information
Locus ID:
Seu_jg12410
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 16201057 | 16218715 | + | Seu_jg12410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 134,364.45 Da | 52.50 | 78.87 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 781 | 837 | 7.16889E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 908 | 1171 | 1.8E-19 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 841 | 905 | 1.3E-6 | IPR001525 |
| Pfam | PF01426 | BAH domain | 519 | 631 | 3.8E-11 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 795 | 835 | 8.4E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 672 | 1171 | 1.08E-70 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 772 | 838 | 4.58E-11 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 454 | 617 | 1.7E-45 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 980 | 1137 | 1.5E-59 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 905 | 979 | 3.2E-23 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 618 | 904 | 1.6E-109 | - |
| SMART | SM00298 | chromo_7 | 781 | 840 | 1.9E-5 | IPR000953 |
| SMART | SM00439 | BAH_4 | 517 | 632 | 9.7E-19 | IPR001025 |
| PIRSF | PIRSF037404 | DNMT1 | 826 | 906 | 6.9E-14 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 904 | 1067 | 9.4E-16 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 608 | 742 | 0.034 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1093 | 1182 | 1.9E-23 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 92 | 387 | 310.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 478 | 653 | 3.3E-8 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 517 | 632 | 18.22477 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 673 | 1178 | 34.427567 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 782 | 835 | 11.761101 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 805 | 825 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 852 | 864 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1153 | 1171 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 915 | 928 | 1.4E-5 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 674 | 690 | 1.4E-5 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology