Basic Information
Locus ID:
Seu_jg12242
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 13693562 | 13702261 | + | Seu_jg12242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 91,147.99 Da | 49.49 | 89.43 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 541 | 674 | 1.11312E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 543 | 673 | 7.8E-40 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 696 | 737 | 6.4E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 501 | 736 | 5.14E-60 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 675 | 762 | 1.4E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 502 | 768 | 1.4E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 539 | 676 | 4.4E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 646 | 665 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 222 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_010676392.2 | ribosome biogenesis ATPase RIX7 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RK87 | AAA domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_056920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology