Basic Information
Locus ID:
Seu_jg12044
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 11013962 | 11029201 | - | Seu_jg12044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 101,328.81 Da | 46.24 | 81.58 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 730 | 884 | 4.40046E-57 | - |
| Pfam | PF06337 | DUSP domain | 44 | 139 | 6.4E-24 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 883 | 4.3E-87 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 17 | 139 | 6.8E-29 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 311 | 886 | 1.18E-112 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 10 | 152 | 3.6E-38 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 620 | 893 | 3.8E-59 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 240 | 3.8E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 297 | 508 | 1.0E-69 | - |
| SMART | SM00695 | dusp | 39 | 142 | 2.6E-29 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 20 | 139 | 19.803009 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 313 | 886 | 61.303871 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 828 | 845 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 305 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_021856779.1 | ubiquitin carboxyl-terminal hydrolase 10-like [Spinacia oleracea] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RMP2 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_048830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology