Basic Information
Locus ID:
Seu_jg11940
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 9869703 | 9871771 | - | Seu_jg11940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 39,049.35 Da | 34.88 | 87.56 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 1.03102E-75 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 173 | 1.25013E-70 | - |
| Pfam | PF00190 | Cupin | 11 | 154 | 1.5E-26 | IPR006045 |
| Pfam | PF00190 | Cupin | 198 | 338 | 2.6E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 12 | 345 | 1.17E-52 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 189 | 4.4E-33 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 193 | 356 | 4.8E-51 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 7.0E-17 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 1.8E-28 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 7.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 7.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 7.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 7.1E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 7.1E-15 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_021835696.1 | glutelin type-B 5-like [Spinacia oleracea] | 0 |
| A0A222NNM9 | Cocosin 1 OS=Cocos nucifera OX=13894 GN=COS-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R191 | 11S globulin OS=Spinacia oleracea OX=3562 GN=SOVF_118090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology