Basic Information
Locus ID:
Seu_jg11646
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING Finger Ubiquitin ligase. Source PGD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 6115093 | 6115671 | - | Seu_jg11646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 22,215.83 Da | 58.17 | 84.64 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 136 | 165 | 1.37444E-6 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 165 | 2.3E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 172 | 1.41E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 168 | 2.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 81 | 164 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 81 | 165 | 9.538678 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021765494.1 | E3 ubiquitin-protein ligase ATL31-like [Chenopodium quinoa] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg24554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11646 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73025, Sgl76565 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0874s00003.v1.0 |