Basic Information
Locus ID:
Seu_jg11220
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 317915 | 325228 | - | Seu_jg11220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 164,189.38 Da | 38.22 | 107.53 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1205 | 1426 | 1.78249E-119 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 892 | 1182 | 1.06684E-76 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 277 | 564 | 4.90761E-89 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 589 | 794 | 1.31532E-95 | - |
| Pfam | PF00005 | ABC transporter | 616 | 746 | 1.7E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 895 | 1133 | 1.5E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 277 | 543 | 4.5E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1224 | 1373 | 2.0E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1199 | 1434 | 6.82E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 269 | 571 | 2.35E-27 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 807 | 1.85E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 892 | 1193 | 1.28E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 241 | 573 | 3.1E-42 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 857 | 1188 | 7.5E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 599 | 843 | 5.4E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1190 | 1444 | 1.9E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1233 | 1425 | 3.8E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 620 | 794 | 5.4E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1207 | 1442 | 17.353743 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 589 | 817 | 19.067753 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 277 | 556 | 30.275993 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 894 | 1170 | 31.897888 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 719 | 733 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021744390.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9G4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_091770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology