Basic Information
Locus ID:
Seu_jg10961
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 47058333 | 47060741 | - | Seu_jg10961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 90,545.56 Da | 35.87 | 81.94 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 437 | 529 | 1.8E-10 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 432 | 591 | 5.31E-38 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 427 | 605 | 1.4E-36 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 420 | 597 | 20.218773 | IPR001584 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021863062.1 | uncharacterized protein LOC110801962 [Spinacia oleracea] | 0 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | 0 | |
| TrEMBL | A0A803LBA1 | Integrase catalytic domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |