Basic Information
Locus ID:
Seu_jg10059
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
V-type proton ATPase subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 21747874 | 21753618 | - | Seu_jg10059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 41,793.06 Da | 39.61 | 84.44 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01991 | ATP synthase (E/31 kDa) subunit | 273 | 344 | 1.9E-10 | IPR002842 |
| Pfam | PF07734 | F-box associated | 91 | 190 | 7.0E-7 | IPR006527 |
| SUPERFAMILY | SSF117281 | Kelch motif | 30 | 180 | 8.76E-5 | IPR015915 |
| SUPERFAMILY | SSF160527 | V-type ATPase subunit E-like | 273 | 346 | 1.14E-6 | - |
| Gene3D | G3DSA:3.30.2320.30 | - | 269 | 356 | 4.2E-11 | IPR038495 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 13 | 183 | 5.7E-12 | IPR017451 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11150.1 | vacuolar ATP synthase subunit E1. Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. | 0 |
| RefSeq | XP_021771170.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q41396 | V-type proton ATPase subunit E OS=Spinacia oleracea OX=3562 GN=VATE PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J6KQD3 | V-type proton atpase subunit e OS=Nicotiana attenuata OX=49451 GN=VATE_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |