Basic Information
Locus ID:
Seu_jg10048
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 21662899 | 21664158 | - | Seu_jg10048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 48,584.56 Da | 38.05 | 91.15 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 260 | 356 | 5.5E-7 | IPR006527 |
| Pfam | PF00646 | F-box domain | 11 | 49 | 1.1E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 55 | 7.46E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 61 | 4.3E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 2.2E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 140 | 353 | 3.1E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021865347.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RTN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_029950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |