Basic Information
Locus ID:
Sbi_jg9889
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 35966212 | 35983394 | + | Sbi_jg9889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 69,157.65 Da | 42.67 | 71.06 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 344 | 622 | 1.20097E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 372 | 3.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 507 | 538 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 587 | 621 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 381 | 414 | 9.3E-6 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 2.2E-5 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 336 | 621 | 3.11E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 467 | 622 | 1.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 466 | 4.3E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 3.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 622 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 458 | 3.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 581 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 372 | 8.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 538 | 5.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 497 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 425 | 467 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 375 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 414 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 591 | 622 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 414 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 8.787457 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 591 | 622 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 425 | 460 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 340 | 375 | 8.966513 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 445 | 459 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 167 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_019106660.1 | transcriptional corepressor LEUNIG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology