Basic Information
Locus ID:
Sbi_jg9749
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 28090054 | 28092733 | + | Sbi_jg9749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 40,169.94 Da | 30.02 | 76.21 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 354 | 5.7E-71 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 258 | 325 | 4.65E-8 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 365 | 5.88E-57 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 356 | 1.4E-87 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 257 | 324 | 1.4E-87 | IPR029070 |
| SMART | SM00636 | 2g34 | 27 | 354 | 6.7E-70 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 27 | 369 | 60.031837 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 130 | 138 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010688359.1 | class V chitinase [Beta vulgaris subsp. vulgaris] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R3W0 | GH18 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology