Basic Information
Locus ID:
Sbi_jg9465
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 18548079 | 18557944 | + | Sbi_jg9465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 125,751.06 Da | 42.68 | 79.45 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 504 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 932 | 966 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50960 | TolB, C-terminal domain | 359 | 595 | 7.98E-28 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 539 | 1061 | 5.49E-39 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 994 | 1129 | 2.12E-8 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 525 | 2.5E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 526 | 705 | 5.7E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 789 | 1119 | 1.2E-29 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.6E-14 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 9.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 357 | 396 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 548 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 884 | 924 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1018 | 1059 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 457 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 927 | 966 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 637 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 594 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 844 | 881 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.608736 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.674217 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 934 | 968 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 934 | 975 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 513 | 10.441614 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1143 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology