HalophFGD

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Basic Information
Locus ID: Sbi_jg9329
Species & Taxonomic ID: Salicornia bigelovii & 46105
Genome Assembly:
Description: Ribonuclease H protein
Maps and Mapping Data
Chromosome Start End Strand ID
ptg000001l 14744069 14754549 + Sbi_jg9329
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.13 31,573.40 Da 53.62 70.98 -0.56
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03004 Plant transposase (Ptta/En/Spm family) 197 268 5.0E-7 IPR004252
MobiDBLite mobidb-lite consensus disorder prediction 253 270 - -
MobiDBLite mobidb-lite consensus disorder prediction 62 135 - -
MobiDBLite mobidb-lite consensus disorder prediction 253 275 - -
MobiDBLite mobidb-lite consensus disorder prediction 66 103 - -
KEGG Pathway
KO Term:
K07408 (cytochrome P450 family 1 subfamily A1 [EC:1.14.14.1])
Pathway:
ko00140 (Steroid hormone biosynthesis) map00140 (Steroid hormone biosynthesis) ko00380 (Tryptophan metabolism) map00380 (Tryptophan metabolism) ko00830 (Retinol metabolism) map00830 (Retinol metabolism) ko00980 (Metabolism of xenobiotics by cytochrome P450) map00980 (Metabolism of xenobiotics by cytochrome P450) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)
Reaction:
R02354 (Estrone + H+ + Oxygen + NADH <=> 2-Hydroxyestrone + NAD+ + H2O) R02355 (Estrone + H+ + Oxygen + NADPH <=> 2-Hydroxyestrone + NADP+ + H2O) R03089 (Estradiol-17beta + H+ + Oxygen + NADPH <=> Estriol + NADP+ + H2O) R03408 (Dehydroepiandrosterone + H+ + Oxygen + NADPH <=> 16alpha-Hydroxydehydroepiandrosterone + NADP+ + H2O) R03629 (Melatonin + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> 6-Hydroxymelatonin + [Oxidized NADPH---hemoprotein reductase] + H2O) R07000 (Naphthalene + NADPH + Oxygen + H+ <=> (1R,2S)-Naphthalene 1,2-oxide + NADP+ + H2O) R07001 (Naphthalene + NADPH + Oxygen + H+ <=> (1S,2R)-Naphthalene 1,2-oxide + NADP+ + H2O) R07021 (1-Nitronaphthalene + NADPH + Oxygen + H+ <=> 1-Nitronaphthalene-7,8-oxide + NADP+ + H2O) R07022 (1-Nitronaphthalene + NADPH + Oxygen + H+ <=> 1-Nitronaphthalene-5,6-oxide + NADP+ + H2O) R07079 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-9,10-oxide + NADP+ + H2O) R07080 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-7,8-oxide + NADP+ + H2O) R07081 (Benzo[a]pyrene + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-4,5-oxide + NADP+ + H2O) R07085 (Benzo[a]pyrene-7,8-dihydrodiol + NADPH + Oxygen + H+ <=> Benzo[a]pyrene-7,8-dihydrodiol-9,10-oxide + NADP+ + H2O) R07087 (9-Hydroxybenzo[a]pyrene + NADPH + Oxygen + H+ <=> 9-Hydroxybenzo[a]pyrene-4,5-oxide + NADP+ + H2O) R07098 (Trichloroethene + NADPH + Oxygen + H+ <=> TCE epoxide + NADP+ + H2O) R07099 (Trichloroethene + NADPH + Oxygen + H+ <=> Chloral + NADP+ + H2O) R08390 (Retinoate + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> all-trans-18-Hydroxyretinoic acid + [Oxidized NADPH---hemoprotein reductase] + H2O) R08392 (Retinoate + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> all-trans-4-Hydroxyretinoic acid + [Oxidized NADPH---hemoprotein reductase] + H2O) R09418 (trans-3,4-Dihydro-3,4-dihydroxy-7,12-dimethylbenz[a]anthracene + Oxygen + NADPH + H+ <=> (1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-Tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol + H2O + NADP+) R09423 (4-(N-Nitrosomethylamino)-1-(3-pyridyl)-1-butanone + Oxygen + NADPH + H+ <=> 4-Hydroxy-4-(methylnitrosoamino)-1-(3-pyridinyl)-1-butanone + H2O + NADP+) R09442 (7,12-Dimethylbenz[a]anthracene + Oxygen + NADPH + H+ <=> 7,12-Dimethylbenz[a]anthracene 5,6-oxide + H2O + NADP+)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_048493852.1 uncharacterized protein LOC125494320 [Beta vulgaris subsp. vulgaris] 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Salicornia bigelovii 53 Sbi_jg10635, Sbi_jg10720, Sbi_jg1293, Sbi_jg13061 ...
Sbi_jg18564, Sbi_jg20154, Sbi_jg22909, Sbi_jg23548, Sbi_jg2624, Sbi_jg26374, Sbi_jg26376, Sbi_jg27672, Sbi_jg28195, Sbi_jg28357, Sbi_jg28789, Sbi_jg31540, Sbi_jg32427, Sbi_jg34902, Sbi_jg35467, Sbi_jg35520, Sbi_jg35797, Sbi_jg36303, Sbi_jg37449, Sbi_jg38994, Sbi_jg38998, Sbi_jg39124, Sbi_jg40215, Sbi_jg40729, Sbi_jg40921, Sbi_jg40961, Sbi_jg41293, Sbi_jg41718, Sbi_jg45579, Sbi_jg47260, Sbi_jg47861, Sbi_jg4840, Sbi_jg49551, Sbi_jg50252, Sbi_jg51327, Sbi_jg51946, Sbi_jg53980, Sbi_jg5405, Sbi_jg54236, Sbi_jg54332, Sbi_jg55467, Sbi_jg5680, Sbi_jg57078, Sbi_jg57460, Sbi_jg59106, Sbi_jg59326, Sbi_jg7370, Sbi_jg8928, Sbi_jg9329
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