Basic Information
Locus ID:
Sbi_jg9010
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin protein ligase DRIP2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 9033679 | 9041074 | - | Sbi_jg9010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 65,072.35 Da | 41.01 | 81.81 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 27 | 67 | 1.6E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 78 | 1.58E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 136 | 6.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 67 | 0.001 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 11.530333 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 158 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.1 | DREB2A-interacting protein 2. Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. | 0 |
| RefSeq | XP_023533637.1 | E3 ubiquitin protein ligase DRIP2 [Cucurbita pepo subsp. pepo] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9W875 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G169500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25168, Sbi_jg9010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19581 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42444, Sgl47173 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12630.v2.2 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.507 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20398, nbis-gene-39672, nbis-gene-39673 |