Basic Information
Locus ID:
Sbi_jg8993
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 8746676 | 8755726 | - | Sbi_jg8993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 48,648.11 Da | 55.68 | 71.93 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 123 | 166 | 1.50501E-18 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 3.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 171 | 1.19E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 173 | 8.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 9.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.636808 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 241 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021850305.1 | RING-H2 finger protein ATL43 [Spinacia oleracea] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QKL3 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_174930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology