Basic Information
Locus ID:
Sbi_jg8885
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 6837773 | 6839047 | + | Sbi_jg8885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 48,576.14 Da | 44.26 | 93.33 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 54 | 9.9E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 65 | 8.5E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 53 | 1.7E-5 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 1.8E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 342 | 1.6E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 56 | 10.636728 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006366000.1 | PREDICTED: F-box/kelch-repeat protein At3g06240-like [Solanum tuberosum] | 0 |
| TrEMBL | A0A0V0I3L3 | Putative F-box/kelch-repeat protein-like (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21148 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah011940, Ah011942, Ah024114, Ah024659, Ah024705 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8885 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19717 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42044, Sgl46820, Sgl74330, Sgl77883 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.396 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19351 |