Basic Information
Locus ID:
Sbi_jg8492
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 605394 | 609467 | - | Sbi_jg8492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 26,533.79 Da | 35.75 | 97.38 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 1.13166E-52 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 1.3E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 188 | 1.0E-24 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 191 | 9.02E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 1.31E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 4.5E-48 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 219 | 2.5E-64 | IPR036419 |
| SMART | SM00322 | kh_6 | 42 | 106 | 0.005 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 191 | 7.4E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 10.804601 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 147 | 183 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31610.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_021858745.1 | 40S ribosomal protein S3-3-like [Spinacia oleracea] | 0 |
| Q9SIP7 | Small ribosomal subunit protein uS3z OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RD33 | 30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_080530 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology