Basic Information
Locus ID:
Sbi_jg8151
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000030l | 57357066 | 57376593 | + | Sbi_jg8151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 79,810.62 Da | 42.15 | 87.44 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 8.2453E-72 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 73 | 280 | 4.03162E-127 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 260 | 1.1E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 606 | 666 | 4.7E-8 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 313 | 407 | 2.1E-16 | IPR001650 |
| Pfam | PF09382 | RQC domain | 482 | 580 | 2.3E-5 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 475 | 7.5E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 423 | 1.35E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 6.2E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 600 | 668 | 3.1E-10 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 280 | 1.2E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 581 | 8.6E-23 | IPR036388 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 2.0E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 9.2E-28 | IPR014001 |
| SMART | SM00956 | RQC_2 | 485 | 582 | 0.0048 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 513 | 2.7E-162 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 23.335379 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | 20.074356 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 597 | 676 | 12.460888 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 689 | - | - |
| Coils | Coil | Coil | 600 | 620 | - | - |
| Coils | Coil | Coil | 11 | 38 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021862388.1 | mediator of RNA polymerase II transcription subunit 34 [Spinacia oleracea] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7T9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_097190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology