Basic Information
Locus ID:
Sbi_jg7904
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000030l | 53524341 | 53527359 | - | Sbi_jg7904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 36,245.99 Da | 54.20 | 73.87 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 55 | 93 | 2.6383E-13 | - |
| CDD | cd03829 | Sina | 171 | 299 | 8.6146E-65 | - |
| Pfam | PF03145 | Seven in absentia protein family | 99 | 298 | 2.2E-77 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 97 | 6.48E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 110 | 302 | 4.64E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 163 | 2.5E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 164 | 298 | 8.3E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 109 | 3.9E-8 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 110 | 170 | 13.946598 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 57 | 93 | 9.287877 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010676268.2 | E3 ubiquitin-protein ligase SINAT5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RF13 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_074340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology