Basic Information
Locus ID:
Sbi_jg7824
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000030l | 52338162 | 52348099 | - | Sbi_jg7824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 116,084.00 Da | 46.82 | 73.45 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 724 | 1039 | 3.09099E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 818 | 850 | 0.041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 903 | 935 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 452 | 545 | 1.4E-11 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 726 | 1040 | 7.02E-49 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 286 | 548 | 3.3E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 702 | 1043 | 7.2E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 854 | 893 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 897 | 935 | 4.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 714 | 758 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1004 | 1041 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 811 | 851 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 769 | 808 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 818 | 860 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 775 | 817 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 904 | 944 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 904 | 937 | 10.416506 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 164 | 540 | 8.923514 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 795 | 809 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 922 | 936 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 922 | 936 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 795 | 809 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 838 | 852 | 1.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology