Basic Information
Locus ID:
Sbi_jg7611
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000030l | 48707054 | 48722667 | - | Sbi_jg7611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 138,488.36 Da | 55.23 | 78.80 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 787 | 843 | 7.36101E-28 | - |
| Pfam | PF01426 | BAH domain | 525 | 637 | 2.3E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 847 | 1203 | 4.4E-37 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 801 | 841 | 8.7E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 778 | 844 | 5.13E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 678 | 1203 | 7.44E-79 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1007 | 1169 | 9.1E-235 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 681 | 1220 | 9.1E-235 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 460 | 623 | 1.4E-44 | IPR043151 |
| SMART | SM00439 | BAH_4 | 523 | 638 | 1.8E-19 | IPR001025 |
| SMART | SM00298 | chromo_7 | 787 | 846 | 1.9E-5 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 856 | 1200 | 1.3E-31 | IPR001525 |
| PIRSF | PIRSF037404 | DNMT1 | 1125 | 1214 | 1.8E-23 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 102 | 400 | 160.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 471 | 655 | 4.6E-7 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 832 | 1099 | 4.5E-43 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 612 | 748 | 0.023 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 523 | 638 | 18.452736 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 788 | 841 | 11.761101 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 679 | 1210 | 47.710854 | IPR001525 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1185 | 1203 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 858 | 870 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 811 | 831 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 901 | 915 | 9.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 947 | 960 | 9.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 680 | 696 | 9.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology